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BioMANTA Publications

A. Newman, Y.-F. Li, and J. Hunter, "Scalable Semantics ñ the Silver Lining of Cloud Computing", in 4th IEEE International Conference on e-Science (e-Science 2008), Indianapolis, Indiana, USA, December 7-12, 2008.

A. Newman, Y.-F. Li, J. Hunter, "A Scale-Out RDF Molecule Store for Improved Co-Identification, Querying and Inferencing", in The 4th International Workshop on Scalable Semantic Web knowledge Base Systems (SSWS 2008) in conjunction with the 7th International Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 26-30, 2008.

A. Newman, Y.-F. Li, and J. Hunter, "BioMANTA - A Scalable Semantic Web Approach to Reasoning across Large-scale Distributed Biomolecular Pathway Datasets", in eResearch Australasia 2008, Melbourne, Australia, September 29 - October 3, 2008.

A. Newman, J. Hunter, Y. F. Li, C. Bouton, M. Davis, "A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data", in Semantic Web for Health Care and Life Sciences Workshop (HCLS 2008), in conjunction with the 17th International World Wide Web Conference (WWW2008), Beijing, China, April 22, 2008.

A. Newman, J. Hunter, Y. F. Li, C. Bouton, M. Davis, "BioMANTA Ontology: The Integration of Protein-Protein Interaction Data", in Interdisciplinary Ontology Conference 2008 (InterOntology 2008), Tokyo, Feb 26-27, 2008.

M. Davis, A. Newman, I. Khan, J. Hunter, M. A. Ragan, "Integrating Hierarchical Controlled Vocabularies with OWL Ontology: A Case Study from the Domain of Molecular Interactions", in the 6th Asia Pacific Bioinformatics Conference (APBC 2008), Kyoto, Jan 14-17, 2008.

Presentations and Posters

A. Newman, "Integrating Protein-Protein Interaction Data", Interdisciplinary Ontology Conference (InterOntology08 Tokyo), Tokyo, Feb 26-27, 2008.

M. J. Davis, "Integrating Hierarchical Controlled Vocabularies with OWL Ontology", 6th Asia Pacific Bioinformatics Conference (APBC08), Kyoto, Jan 14-17, 2008.

M. Davis, A. Newman, "The Architecture and Design of the BioMANTA Ontology and Software", ARC Centre of Excellence in Bioinformatics (ACB) All Hands Meeting, Nov 2007

M. S. Sehgal, "BioMANTA: Modeling and Network Analysis of Biological Networks II - Knowledge Discovery and Network Analysis", ARC Centre of Excellence in Bioinformatics (ACB) All Hands Meeting, Nov 2007

M. S. Sehgal, M. J. Davis, K. Burrage, V. Farutin, J. Hunter, F. Jerva, I. Khan, Y. F. Li, A. Newman, M. Schaffer, C. Bouton, M. A. Ragan, " BioMANTA" (Poster), ARC Centre of Excellence in Bioinformatics (ACB) All Hands Meeting, Nov 2007

M. Schaffer, V. Farutin, "COBALT, Connection of Biological Lists", Nov 2007

M. S. Sehgal, M. J. Davis, K. Burrage, V. Farutin, J. Hunter, F. Jerva, I. Khan, Y. F. Li, A. Newman, M. Schaffer, C. Bouton, M. A. Ragan "Representing the Interactome: Transforming data from the Semantic Web for network meta-analysis" (Poster), Bioinformatics Australia 2007 Conference, Oct 23-24, 2007.

A. Newman, "Overview of BioMANTA software, RDF triple storage and RDF molecules", ITEE eResearch Meeting, Oct 2007