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  • Hoehndorf, R., Bacher, J., Backhaus, M., Gregorio, S.E., Loebe, F., Prüfer, K., Uciteli, A., Visagie, J., Herre, H., and Kelso, J., (2009). BOWiki: An ontology-based wiki for annotation of data and integration of knowledge in biology. BMC Bioinformatics 10(Suppl 5):S5.1-S5.8.
  • Noy, N.F., Shah, N.H., Whetzel, P.L., Dai, B., Dorf, M., Griffith, N., Jonquet, C., Rubin, D.L., Storey, M.A., Chute, C.G., and Musen, M.A. BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse. Nucleic Acids Res. 2009(37)W170-3
  • Fink, J.L., Fernicola, P., Chandran, R., Parastatidis, S., Wade, A., Naim, O., Quinn, G.B., Bourne, P.E. Word add-in for ontology recognition: semantic enrichment of scientific literature. BMC Bioinformatics. 2010 Feb 24;11:103.
  • Ackerman, M.J., The Visible Human Project. Proceedings of the IEEE, 1998. 86(3): p. 504-511.
  • Ashburner, M., et al., Gene Ontology: Tool for the Unification of Biology. Nature Genetics, 2000. 25: p. 25-29.
  • Bairoch, A., et al., The Universal Protein Resource (UniProt). Nucl. Acids Res., 2005. 33(suppl_1): p. D154-159.
  • Berners-Lee, T., J. Hendler, and O. Lassila, The Semantic Web. Scientific American, 2001. 284(5): p. 35-43.
  • Bloehdorn, S., et al. Semantic Annotation of Images and Videos for Multimedia Analysis. in Proceedings of the Second European Semantic Web Conference (ESWC'05). 2005. Heraklion, Crete, Greece: Springer.
  • Doerr, M., J. Hunter, and C. Lagoze, Towards a Core Ontology for Information Integration. Journal of Digital Information, 2003. 4(1).
  • Gardner, S.P., Ontologies and Semantic Data Integration. Drug Discovery Today, 2005. 10(14): p. 1001-1007
  • Golbeck, J. and M. Rothstein. Linking Social Networks on the Web with FOAF: A Semantic Web Case Study. in Proceedings of the Twenty-Third Conference on Artificial Intelligence (AAAI'08). 2008. Chicago, USA.
  • Hall, C.M. and J. Washbrook, Radiological Electronic Atlas of Malformation Syndromes and Skeletal Dysplasias. 1999, Oxford University Press.
  • Hamosh, A., et al., Online Mendelian Inheritance in Man (OMIM), a Knowledgebase of Human Genes and Genetic Disorders. Nucl. Acids Res., 2005. 33(suppl_1): p. D514-517.
  • Heer, J., S.K. Card, and J.A. Landay. Prefuse: A Toolkit for Interactive Information Visualization. in Proceedings of the SIGCHI Conference on Human Factors in Computing Systems. 2005: ACM.
  • Hoffmann, R., A Wiki for the Life Sciences where Authorship Matters. Nat Genet, 2008. 40(9): p. 1047-1051.
  • Huss, J.W., et al., A Gene Wiki for Community Annotation of Gene Function. PLoS Biology, 2008. 6(7): p. 1398-1402.
  • Jakobsen, I.B., T.G. Wyeld, D.P. Hansen and A. Zankl. Visualising A Skeletal Dysplasia Knowledgebase. in MEDIVIS '07: Proceedings of the International Conference on Medical Information Visualisation - BioMedical Visualisation. 2007. Washington, DC, USA: IEEE Computer Society.
  • Jeon, J., V. Lavrenko, and R. Manmatha. Automatic Image Annotation and Retrieval Using Cross-media Rele-vance Models. in SIGIR '03: Proceedings of the 26th annual international ACM SIGIR conference on Research and development in information retrieval. 2003. Toronto, Canada: ACM.
  • Kerrien, S., et al., IntAct--open source resource for molecular interaction data. Nucleic Acids Res, 2006. 00(Database issue): p. 561-5.
  • Krötzsch, M., D. Vrandecic, and M. Völkel. Semantic Mediawiki. in International Semantic Web Conference (ISWC 2006). 2006. Athens, GA, USA: Springer.
  • Leuf, B. and W. Cunningham, The Wiki Way: Quick Collaboration on the Web. 2001, Boston, MA, USA: Addi-son-Wesley Longman Publishing Co., Inc.
  • Newman, A., J. Hunter, Y.-F. Li, C. Bouton and M. Davis. BioMANTA Ontology: The Integration of Pro-tein-Protein Interaction Data. in Proceedings of Interdisciplinary Ontology Conference 2008 (InterOntology08). 2008. Tokyo, Japan.
  • O'Reilly, T., What is Web 2.0: Design Patterns and Business Models for the Next Generation of Software. Com-munications & Strategies, 2007. 65: p. 17-37.
  • Searls, D.B., Data Integration: Challenges for Drug Discovery. Nature Reviews Drug Discovery, 2005. 4(1): p. 45-58.
  • Shannon, P., et al., Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Net-works. Genome Research, 2003. 13: p. 2498-2504.
  • Smith, B., et al., The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology, 2007. 25: p. 1251-1255.
  • Spasic, I., et al., Text Mining and Ontologies in Biomedicine: Making Sense of Raw Text. Brief Bioinform, 2005. 6(3): p. 239-251.
  • Superti-Furga, A., S. Unger, and the Nosology Group of the International Skeletal Dysplasia Society, Nosology and Classification of Genetic Skeletal Disorders: 2006 Revision. American Journal of Medical Genetics Part A, 2006. 143A(1): p. 1-18.
  • Varlamis, I. and I. Apostolakis, Medical Informatics in the Web 2.0 Era, in New Directions in Intelligent Interac-tive Multimedia, G.A. Tsihrintzis, et al., Editors. 2008, Springer. p. 513-522.

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