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Summer of Spikes
Summer Semester, 2009
elec4001 and engg7301

Course Profile
elec4001, engg7301

Assessment
deliverables

Software

Further
Readings

Project suggestions

Prerequisites

 


LECTURES are open to all UQ staff and students. Labs are for enrolled students only.
Lectures: Monday, Wednesday, 2-4pm in 79-707, starting from week 1.
Labs: Thursday 1pm-3pm in 78-110, starting from week 2, on Dec. 10th, Dec. 17th, and Jan. 7th.

Wk

Date

Proposed Schedule (subject to change)

1

30 Nov

2pm Angelique Paulk- What is a brain?
3pm Angelique Paulk-
What is a neuron?

1

2 Dec

2pm Pankaj Sah- What are synapses?
3pm Pankaj Sah-
What is neural plasticity?

2

7 Dec

2pm Angelique Paulk- Why model neurons?       
3pm Angelique Paulk-
How do we do it?             

2

9 Dec

2pm Angelique Paulk- What is Matlab? 

3pm Peter Stratton- What is a network model? 

2

10 Dec

1pm Practical 1- Learning Neuron- two hours

3

14 Dec

2pm Peter Stratton- How do you work with network models in Matlab?             

3pm Peter Stratton- What is the gap between neurons and networks? 

3

16 Dec

2pm Francois Windels- How to we relate network models to the biology of the brain?
3pm Bruno van Swinderen- How do we relate these approaches to understanding an area of the brain?  

3

17 Dec

1pm Practical 2- Learning Matlab- two hours

Break

4

4 Jan

2pm Review 
3pm Introduce approaches by guest speakers

4

6 Jan

2pm Jean-Marc Fellous- Basic analytical tools to understand neural data: pros and cons

4

7 Jan

1pm Practical 3- Analysis and Projects- two hours

5

11 Jan

2pm Jean-Marc Fellous- Neuromodulatory power... same neurons, different functions

5

12 Jan

1:30pm Jean-Marc Fellous- It is time for spikes! Spike timing and spike patterns.

6

18 Jan

2pm Guy Wallis

6

20 Jan

2pm Anthony Burkitt

7

25 Jan

2pm Michael Breakspear- Populations of spiking neurons: From bifurcations to moments and hierarchies

7

27 Jan

Guest speaker

8

1 Feb

2pm Benedikt Grothe

8

3 Feb

2pm Project presentations


 

ASSESSMENT DELIVERABLES (dates will be finalized in week 1)

 

Requirement
& Marks

Deliverable Components
Assessment criteria are provided with the assignment sheet

Time estimate
(total 130 hours)

Advice / Handouts/Feedback

Participation at lectures (10%)

Wks 1-8

Marks will be given for participation in class.

Lectures: 26 hrs

Participation means taking part in class discussions, asking and answering questions. Students who prefer not to speak during the class may hand in written questions for the lecturer at the end of the class.

Participation at lab (10%)

Wks 1-8

Marks will be given for participation in lab.

Labs: 6 hrs  (includes 6 hrs prep)

Participation means taking part in class discussions, asking and answering questions. Students who prefer not to speak during the lab may hand in written questions for the lecturer at the end of the class.

Project (80%)

Wk 3

Asgt 1a. Project title and abstract (pass/fail)

2 hours

Due on the 14th of December, with a one page draft

Wk 5

Asgt 1b. Project Proposal and lit review, and preliminary results (25%)

23 hours

Full project proposal with literature review due on the 11th of January.

Wk 8

Asgt 1c. Project report (55%)

60 hours

Due on the February 3rd.


TUTORIALS will be held in Building 79-707 Mondays and Wednesdays from 3 pm, starting from week 4, subject to guest speaker times and availability.

Week

Date

DRAFT (will be finalised in week 1)
Tutorials

1

 

None

2

 

None

3

 

None

4

 

Project work

5

 

Project work

6

 

Project work

7

 

Project work

8

 

Project work

 


PREREQUISITES

 

At least 2.5 years of university-level coursework in science, maths, and/or engineering.

 


 

FURTHER READINGS

 

Matlab for Neuroscientists will be available for download from the library

Description of the book:

http://www.elsevier.com/wps/find/bookdescription.cws_home/716634/description#description

 

Additional neuroscience readings will be provided.

 


 USEFUL LINKS

Software used in practicals:

 

Neuron (freeware)

Homepage: http://www.neuron.yale.edu/neuron/

Documentation: http://www.neuron.yale.edu/neuron/docs


Matlab (available for students for free)

Homepage: http://www.mathworks.com/

Documentation:

http://www.mathworks.com/access/helpdesk/help/techdoc/index.html?/access/helpdesk/help/techdoc/matlab.shtml

                                                                                                                                                                                          

 

Summer of Spikes course website: http://www.thinkingsystems.edu.au/spikes/

 

Summer of Spikes course profile: http://www.itee.uq.edu.au/~elec4001/  

 

Thinking Systems website: http://www.itee.uq.edu.au/~janetw/ThinkingSystems/  & http://www.thinkingsystems.edu.au/

 

Additional courses on computational neuroscience:

 

Short Course in Computational Neuroscience (Feb 10-12, 2010):

http://www.qbi.uq.edu.au/index.html?page=90819&pid=0

 

 

Websites for the guest speakers:

 

Michael Breakspear http://sites.google.com/site/systemsneurosciencegroup/people/michael-breakspear

Anthony Burkitt http://bionicvision.org.au/professor-anthony-burkitt

Jean-Marc Fellous http://www.u.arizona.edu/~fellous/

Benedikt Grothe http://www.zi.biologie.uni-muenchen.de/institute/zi/abtlgn/neurobiologie/AG_Grothe.htm

Pankaj Sah http://www.qbi.uq.edu.au//index.html?page=13990

Peter Stratton http://www.itee.uq.edu.au/~stratton/

Bruno van Swinderen http://www.qbi.uq.edu.au/index.html?page=71665

Guy Wallis http://www.hms.uq.edu.au/Guy-Wallis

Janet Wiles http://www.itee.uq.edu.au/~janetw/

Francois Windels http://www.thewindels.org/html/francois_windels.html

Gordon Wyeth http://www.it.uq.oz.au/~wyeth/

 


 

PROJECT SUGGESTIONS

 

To be announced.

 

Students taking approved summer research projects can use their projects as a project assessment deliverable for this course.

 

Possible summer research projects:

 

Thinking Systems summer projects:

http://www.thinkingsystems.edu.au/summer2009.html

 

SCIE3044:

http://www.uq.edu.au/study/course.html?course_code=SCIE3044&id=005519&offer=53544c554333494e

 


Back to the Summer of Spikes home page.

 

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