Summer of Spikes
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Wk |
Date |
Proposed Schedule (subject to change) |
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1 |
30 Nov |
2pm Angelique Paulk- What is a brain? |
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1 |
2 Dec |
2pm Pankaj Sah- What are synapses? |
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2 |
7 Dec |
2pm Angelique Paulk- Why model neurons?
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2 |
9 Dec |
2pm Angelique Paulk- What is Matlab? 3pm Peter Stratton- What is a network model? |
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2 |
10 Dec |
1pm Practical 1- Learning Neuron- two hours |
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3 |
14 Dec |
2pm Peter Stratton- How do you work with network models in Matlab? 3pm Peter Stratton- What is the gap between neurons and networks? |
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3 |
16 Dec |
2pm Francois Windels- How to we relate network models to the
biology of the brain? |
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3 |
17 Dec |
1pm Practical 2- Learning Matlab- two hours |
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Break |
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4 |
4 Jan |
2pm Review |
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4 |
6 Jan |
2pm Jean-Marc Fellous- Basic analytical tools to understand neural data: pros and cons |
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4 |
7 Jan |
1pm Practical 3- Analysis and Projects- two hours |
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5 |
11 Jan |
2pm Jean-Marc Fellous- Neuromodulatory power... same neurons, different functions |
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5 |
12 Jan |
1:30pm Jean-Marc Fellous- It is time for spikes! Spike timing and spike patterns. |
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6 |
18 Jan |
2pm Guy Wallis |
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6 |
20 Jan |
2pm Anthony Burkitt |
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7 |
25 Jan |
2pm Michael Breakspear- Populations of spiking neurons: From bifurcations to moments and hierarchies |
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7 |
27 Jan |
Guest speaker |
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8 |
1 Feb |
2pm Benedikt Grothe |
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8 |
3 Feb |
2pm Project presentations |
ASSESSMENT DELIVERABLES (dates will be finalized in week 1)
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Requirement |
Deliverable Components |
Time estimate |
Advice / Handouts/Feedback |
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Participation at lectures (10%) |
Wks 1-8 |
Marks will be given for participation in class. |
Lectures: 26 hrs |
Participation means taking part in class discussions, asking and answering questions. Students who prefer not to speak during the class may hand in written questions for the lecturer at the end of the class. |
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Participation at lab (10%) |
Wks 1-8 |
Marks will be given for participation in lab. |
Labs: 6 hrs (includes 6 hrs prep) |
Participation means taking part in class discussions, asking and answering questions. Students who prefer not to speak during the lab may hand in written questions for the lecturer at the end of the class. |
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Project (80%) |
Wk 3 |
Asgt 1a. Project title and abstract (pass/fail) |
2 hours |
Due on the 14th of December, with a one page draft |
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Wk 5 |
Asgt 1b. Project Proposal and lit review, and
preliminary results (25%) |
23 hours |
Full project proposal with
literature review due on the 11th of January. |
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Wk 8 |
Asgt 1c. Project report (55%) |
60 hours |
Due on the February 3rd. |
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TUTORIALS will be held in Building 79-707
Mondays and Wednesdays from 3 pm, starting from week 4, subject to guest
speaker times and availability.
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Week |
Date |
DRAFT (will be finalised in
week 1) |
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1 |
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None |
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2 |
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None |
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3 |
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None |
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4 |
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Project work |
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5 |
|
Project work |
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6 |
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Project work |
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7 |
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Project work |
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8 |
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Project work |
At least 2.5 years of
university-level coursework in science, maths, and/or engineering.
Matlab for Neuroscientists will be available for download from the library
Description of the book:
http://www.elsevier.com/wps/find/bookdescription.cws_home/716634/description#description
Additional neuroscience
readings will be provided.
Neuron (freeware)
Homepage: http://www.neuron.yale.edu/neuron/
Documentation: http://www.neuron.yale.edu/neuron/docs
Matlab (available for students for free)
Homepage: http://www.mathworks.com/
Documentation:
Summer of Spikes course
website: http://www.thinkingsystems.edu.au/spikes/
Summer of Spikes course
profile: http://www.itee.uq.edu.au/~elec4001/
Thinking Systems website: http://www.itee.uq.edu.au/~janetw/ThinkingSystems/ & http://www.thinkingsystems.edu.au/
Additional courses on
computational neuroscience:
Short Course
in Computational Neuroscience (Feb 10-12,
2010):
http://www.qbi.uq.edu.au/index.html?page=90819&pid=0
Websites
for the guest speakers:
Michael Breakspear http://sites.google.com/site/systemsneurosciencegroup/people/michael-breakspear
Anthony Burkitt http://bionicvision.org.au/professor-anthony-burkitt
Jean-Marc Fellous http://www.u.arizona.edu/~fellous/
Benedikt Grothe http://www.zi.biologie.uni-muenchen.de/institute/zi/abtlgn/neurobiologie/AG_Grothe.htm
Pankaj Sah http://www.qbi.uq.edu.au//index.html?page=13990
Peter Stratton http://www.itee.uq.edu.au/~stratton/
Bruno van Swinderen http://www.qbi.uq.edu.au/index.html?page=71665
Guy Wallis http://www.hms.uq.edu.au/Guy-Wallis
Janet Wiles http://www.itee.uq.edu.au/~janetw/
Francois Windels http://www.thewindels.org/html/francois_windels.html
Gordon Wyeth http://www.it.uq.oz.au/~wyeth/
To be announced.
Students taking approved summer research projects can use their projects
as a project assessment deliverable for this course.
Possible
summer research projects:
Thinking Systems summer projects:
http://www.thinkingsystems.edu.au/summer2009.html
SCIE3044:
http://www.uq.edu.au/study/course.html?course_code=SCIE3044&id=005519&offer=53544c554333494e
Back to the Summer of Spikes
home page.
CRICOS Provider Number : 00025B
