 |
 > Publications of John Hawkins |
|
| Papers |
|
| Hawkins, J., Mahony, D., Maetschke, S., Wakabayashi, M., Teasdale, R. and Bodén, M.
(2007). Identifying Novel Peroxisomal Proteins. Proteins: structure, Function, and Bioinformatics.
Volume 69, Issue 3, Pages 606 - 616.
|
View |
| Hawkins, J., Davis, L. and Bodén, M. (2007).
Predicting Nuclear Localization. Journal of Proteome Research. 6(4); 1402-1409.
|
View
|
Davis, L., Hawkins, J., Maetschke, S. and Bodén, M. (2006).
Comparing SVM sequence kernels: A protein subcellular localization theme,
In Proceedings of the Workshop on Intelligent Systems for Bioinformatics,
CRPIT (vol. 73). |
 |
Hawkins, J. and Bodén, M. (2006). Multi-stage Redundancy
Reduction: Effective Utilisation of Small Protein Data Sets,
In Proceedings of the Workshop on Intelligent Systems for Bioinformatics,
CRPIT (vol. 73). |
|
| Bodén, M. and Hawkins, J. (2006).
Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway.
CEC 2006, (Winner: Best Paper in Session).
|
|
| Hawkins, J., Beard, R. and McDonald, S. (2006).
A multi-agent simulation model of fishery fleet dynamics for the Queensland coral reef line fishery.
AARES 2006
|
|
| Hawkins, J. and Bodén, M. (2006).
Detecting and Sorting Targeting Peptides with Recurrent Networks and Support Vector Machines.
Journal of Bioinformatics and Computational Biology, 4(1).
|
|
| Hawkins, J. and Bodén, M. (2005).
Predicting Peroxisomal Proteins.
2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology
|
|
| Watson, J., Hawkins, J., Bradley, D., Dassanayake, D., Wiles, J., and Hanan, J. (2005).
Towards a network pattern language for complex systems.
In Abbass, H., Bossamaier, T., and Wiles, J., editors,
Recent Advances in Artificial Life,
Volume 3 of Advances in Natural Computation,
Pages 309-317, 349-358. World Scientific.
|
|
| Bodén, M. and Hawkins, J. (2005)
Prediction of subcellular localisation using sequence-biased recurrent networks.
Bioinformatics. 21(10), pp. 2279-2286. |
 |
| Wakabayashi, M., Hawkins, J., Maetschke, S. and Bodén, M. (2005)
Exploiting sequence dependencies in the prediction of peroxisomal
proteins. In Intelligent Data Engineering and Automated Learning - IDEAL 2005, pp. 454-461. |
|
| Hawkins, J. and Bodén, M. (2005).
The Applicability of Recurrent Neural Networks for Biological Sequence Analysis.
IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2(2). |
|
| Bodén, M. and Hawkins, J. (2005).
Improved access to sequential motifs: A note on the architectural bias of recurrent networks.
IEEE Transactions on Neural Networks.
16(2), 491-494. |
|
| Bodén, M. and Hawkins, J. (2005).
Detecting residues in targeting peptides.
In Proceedings of the Asia-Pacific Bioinformatics Conference. Singapore. |
|
| Submitted |
|
| Hawkins, J. and Bodén, M.,
The Janus Face of Bias: Machine Learning Architectures for Biological Motif Recognition
|
|
| Hawkins, J. and Bailey, Timothy L.,
The Statistical Power of Phylogenetic Motif Models
|
|
| In Preparation |
|
| Hawkins, J. and Bodén, M.,
When Recurrent Networks Fail!
|
|
| Abandoned |
|
| Hawkins, J. and Bodén, M.,
Exploring the Architectural Bias of Neural Networks for Biological Sequence Recognition
|
|
|
