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 > Software by John Hawkins |
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| Nucleo: Nuclear Localisation Predictor |
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| Nucleo is specialised prediction service written in Java using a
support vector machine with a customised kernel.
The software will accept a protein sequence in FASTA format and
produce a probabilistic prediction of whether the protein is
likely to be imported into the nucleus of a eukaryotic cell. |
| Developed by Hawkins, J., Davis, L. and Bodén, M., |
Nucleo |
| PPRowler: Protein Localisation Predictor |
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| PProwler is a collection of prediction services written in Java using a
variety of machine learning techniques. The software will accept a
protein sequence in FASTA format and produce a probabilistic prediction
of where the protein is likely to be localised within a eukaryotic cell. |
| Developed by Bodén, M., Hawkins, J., Wakabayashi, M. and Watson, J. |
PProwler |
| Fisheries Simulator |
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| The Fisheries simulator will model the interaction between fleet of reef line fishing boats and fish populations. The goal is to produce a tool for scenario testing in ecological management. |
| Developed by Hawkins, J. |
Not Available |
| Bioinformatics Scripts |
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| Here are a collection of small scripts I have created to save me time with assorted bioinformatics tasks. |
| Split a fasta file into several different files. First argument is the number of sequences per file. Second argument the input filename, and the third argument if present is the stub for the outputfiles. |
splitFasta.py |
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